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Data sets

1.1. Chromosome 1

  • PXD000529 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.

1.2. Chromosome 2


Missing proteins mapping human chromosome 2 and 14 detected in different samples (tissues, cell type names, type of fraction): PXD002131(external link). Contact: Anne Gonzalez.
Missing protein mapping human chromosomes detected in the spermatozoa: PXD002367(external link). Contact: Charles Pineau.
Missing protein mapping human chromosomes detected in the spermatozoa: an update: PXD003947(external link). Contact: Yves Vandenbrouck.

1.3. Chromosome 3


1.4. Chromosome 4


1.5. Chromosome 5


1.6. Chromosome 6


1.7. Chromosome 7


1.8. Chromosome 8

  • PXD000529 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.

1.9. Chromosome 9

  • PXD000603 for lung tissue (not yet released).

1.10. Chromosome 10


1.11. Chromosome 11

  • PXD000395 for brain tissue (not yet released).

1.12. Chromosome 12


1.13. Chromosome 13

  • PXD000754 for placenta tissue.
  • PXD004723 for TMT labelled human placenta cell line (not yet released).

1.14. Chromosome 14

  • Missing proteins mapping human chromosome 2 and 14 detected in different samples (tissues, cell type names, type of fraction): PXD002131. Contact: Anne Gonzalez.
  • Missing protein mapping human chromosomes detected in the spermatozoa: PXD002367. Contact: Charles Pineau.
  • Missing protein mapping human chromosomes detected in the spermatozoa: an update: PXD003947. Contact: Yves Vandenbrouck.

1.15. Chromosome 15

  • PXD000547 for the corpus callosum from human brain as part of BD-HPP (not yet released).
  • PXD000548 for the the anterior temporal lobe from human brain as part of BD-HPP (not yet released).
  • PXD000584 shotgun imaging analyzer gastric cancer.

1.16. Chromosome 16

  • PXD000039 MCF7 breast cancer human epithelial cells, CCD18 human colon fibroblasts, and Jurkat human T lymphocytes.
  • PXD000442 MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data.
  • PXD000443 MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Jurkat cell line. 2 laboratories contributed to compile all the reported data.
  • PXD000447 MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Ramos cell line. 3 laboratories contributed to compile all the reported data.
  • PXD000449 MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the CCD18 cell line. 6 laboratories contributed to compile all the reported data.
  • PASS00925 SRM DNAH3 in spermatozoa and ATAD3C in HEK293 cells

1.17. Chromosome 17

For proteomics data see further at the link and peripheral leukocyte data at the link.
PXD000468 (not yet released).

1.18. Chromosome 18

1.19. Chromosome 19


PXD000563 Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines.

1.20. Chromosome 20

  • PXD000529 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535 chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.

1.21. Chromosome 21


1.22. Chromosome 22


PXD000561 (not yet released).

1.23. Chromosome X


1.24. Chromosome Y


1.25. Mitochondrial Chromosome