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Protein evidence information

Missing Proteinpedia

Missing Proteinpedia(external link) summarizing known infomration on missing proteins (PE2-PE5) were launched by Macquerie University, Sydney.

Protein evidence summary

Statistics of protein evidence in NextProt(external link)

  • Regularly updated general statistics on protein validation status for each chromosome is available at NextProt(external link). Interactive chart to represent the current status of missing proteins is available here(external link).
  • Detailed information for each chromosome including the presence of SNPs, PTMs, splice variants and other information is available at NextProt(external link).

Summary of protein evidence using Human Protein Atlas(external link) (HPA) data

  • Summary of protein evidence based on antibody generated within the Human Protein Atlas(external link) for all chromosomes according to data avaiable until August 2013. This information is not yet published, confidential is is only accessible to registered persons member to C-HPP consortium and the information is available here. Explanation of protein evidence score in Human Protein Atlas is available here.
  • The Human Protein Atlas has reached a major milestone by releasing protein data for more than 80% of the human protein-coding genes and RNA expression data for more than 90% of the genes. The normal tissue atlas now provide a distribution map of both protein and gene expression.

Peptide Atlas(external link) Chromosome Centric

Pepetide atlas provides list of protein evidence for each chromsome online here(external link).

SWATH(external link) Atlas resources for >10 000 proteins

Fragment library of unique peptides > 10 000 proteins is available at SWATH Atlas(external link).

SRM Atlas(external link) for peptide detection resources

SRM Atlas(external link) contains collections of MRM assays for various set of proteins and for different mass spectrometers.