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Data sets


1. Chromosome 1


  • PXD000529(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.


2. Chromosome 2


Missing proteins mapping human chromosome 2 and 14 detected in different samples (tissues, cell type names, type of fraction): PXD002131(external link). Contact: Anne Gonzalez.
Missing protein mapping human chromosomes detected in the spermatozoa: PXD002367(external link). Contact: Charles Pineau.
Missing protein mapping human chromosomes detected in the spermatozoa: an update: PXD003947(external link). Contact: Yves Vandenbrouck.

3. Chromosome 3




4. Chromosome 4




5. Chromosome 5




6. Chromosome 6




7. Chromosome 7




8. Chromosome 8


  • PXD000529(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.


9. Chromosome 9


  • PXD000603(external link) for lung tissue (not yet released).


10. Chromosome 10




11. Chromosome 11


  • PXD000395(external link) for brain tissue (not yet released).


12. Chromosome 12




13. Chromosome 13


  • PXD000754(external link) for placenta tissue.
  • PXD004723(external link) for TMT labelled human placenta cell line (not yet released).

14. Chromosome 14


  • Missing proteins mapping human chromosome 2 and 14 detected in different samples (tissues, cell type names, type of fraction): PXD002131(external link). Contact: Anne Gonzalez.
  • Missing protein mapping human chromosomes detected in the spermatozoa: PXD002367(external link). Contact: Charles Pineau.
  • Missing protein mapping human chromosomes detected in the spermatozoa: an update: PXD003947(external link). Contact: Yves Vandenbrouck.

15. Chromosome 15


  • PXD000547(external link) for the corpus callosum from human brain as part of BD-HPP (not yet released).
  • PXD000548(external link) for the the anterior temporal lobe from human brain as part of BD-HPP (not yet released).
  • PXD000584(external link) shotgun imaging analyzer gastric cancer.


16. Chromosome 16


  • PXD000039(external link) MCF7 breast cancer human epithelial cells, CCD18 human colon fibroblasts, and Jurkat human T lymphocytes.
  • PXD000442(external link) MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data.
  • PXD000443(external link) MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Jurkat cell line. 2 laboratories contributed to compile all the reported data.
  • PXD000447(external link) MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Ramos cell line. 3 laboratories contributed to compile all the reported data.
  • PXD000449(external link) MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the CCD18 cell line. 6 laboratories contributed to compile all the reported data.
  • PASS00925(external link) SRM DNAH3 in spermatozoa and ATAD3C in HEK293 cells

17. Chromosome 17

For proteomics data see further at the link(external link) and peripheral leukocyte data at the link(external link).
PXD000468(external link) (not yet released).


18. Chromosome 18




19. Chromosome 19


PXD000563(external link) Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines.


20. Chromosome 20


  • PXD000529(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 1/3.
  • PXD000533(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 2/3.
  • PXD000535(external link) chr 1,8,20 proteome dataset using the HCC cell lines of MHCC97H and HCCLM3, instrument is Q. Part 3/3.


21. Chromosome 21




22. Chromosome 22


PXD000561(external link) (not yet released).


23. Chromosome X




24. Chromosome Y




25. Mitochondrial Chromosome